Journal of Biomedical Optics
VOL. 14 · NO. 5 | September 2009
CONTENTS
IN THIS ISSUE

Editorial (1)
Errata (3)
Editorial
Journal of Biomedical Optics, Vol. 14, Issue 05, 050101, (September 2009) https://doi.org/10.1117/1.3258205
Open Access
TOPICS: Biomedical optics, Coherence imaging, Preclinical imaging, Fluorescent proteins, Photonics, Raman spectroscopy, Medicine, Databases, Multimedia, Graphic arts
JBO Letters
Journal of Biomedical Optics, Vol. 14, Issue 05, 050501, (September 2009) https://doi.org/10.1117/1.3213569
Open Access
TOPICS: Mirrors, Eye, Image segmentation, Optical coherence tomography, In vivo imaging, Cornea, Imaging systems, Scanners, Fourier transforms, Spectroscopy
Zhijia Yuan, Bai Chen, H. Ren, Yingtian Pan
Journal of Biomedical Optics, Vol. 14, Issue 05, 050502, (September 2009) https://doi.org/10.1117/1.3223246
Open Access
TOPICS: Bladder, Optical coherence tomography, Bladder cancer, Speckle, Tissue optics, Cancer, 3D image processing, 3D image enhancement, Imaging systems, Endoscopy
Shuaixia Tan, Hongjun Dai, Juejie Wu, Ning Zhao, Xiaoli Zhang, Jian Xu
Journal of Biomedical Optics, Vol. 14, Issue 05, 050503, (September 2009) https://doi.org/10.1117/1.3227034
Open Access
TOPICS: Diffusion, Polymers, Molecules, Speckle pattern, Data modeling, Interferometry, Refractive index, Chemistry, Molecular interactions, Charge-coupled devices
Journal of Biomedical Optics, Vol. 14, Issue 05, 050504, (September 2009) https://doi.org/10.1117/1.3233590
Open Access
TOPICS: Microfluidics, Microfluidic imaging, Tissue optics, Tissues, Doppler tomography, Interference (communication), Scattering, Optical coherence tomography, Tissue engineering, Imaging systems
Joseph Chaiken, Jerry Goodisman, Bin Deng, Rebecca Bussjaeger, George Shaheen
Journal of Biomedical Optics, Vol. 14, Issue 05, 050505, (September 2009) https://doi.org/10.1117/1.3233629
Open Access
TOPICS: Scattering, Light scattering, Plasma, Luminescence, Capillaries, Tissue optics, Skin, Blood, Tissues, Raman spectroscopy
Irina Larina, Kenryo Furushima, Mary Dickinson, Richard Behringer, Kirill Larin
Journal of Biomedical Optics, Vol. 14, Issue 05, 050506, (September 2009) https://doi.org/10.1117/1.3241044
Open Access
TOPICS: Optical coherence tomography, Heart, Doppler tomography, Doppler effect, 3D image processing, 3D modeling, Imaging systems, Physiology, Blood circulation, Genetics
Research Papers
Bernhard Lange-Asschenfeldt, Alena Alborova, Daniela Kruger-Corcoran, Alexa Patzelt M.D., Heike Richter, Wolfram Sterry M.D., Axel Kramer, Eggert Stockfleth, Jürgen Lademann
Journal of Biomedical Optics, Vol. 14, Issue 05, 054001, (September 2009) https://doi.org/10.1117/1.3213603
Open Access
TOPICS: Wound healing, Skin, Tissues, Luminescence, In vivo imaging, Tissue optics, Laser scanners, Microscopy, Dermatology, Optical fibers
Christina Ambrosi, Nader Moazami M.D., Andrew Rollins, Igor Efimov
Journal of Biomedical Optics, Vol. 14, Issue 05, 054002, (September 2009) https://doi.org/10.1117/1.3213604
Open Access
TOPICS: Optical coherence tomography, Tissues, Heart, Natural surfaces, Optical fibers, Visualization, Imaging systems, Spatial resolution, Arteries, Computed tomography
Journal of Biomedical Optics, Vol. 14, Issue 05, 054003, (September 2009) https://doi.org/10.1117/1.3213602
Open Access
Jared Stephens, Samarendra Mohanty, Suzanne Genc, Xiangduo Kong, Kyoko Yokomori, Michael Berns
Journal of Biomedical Optics, Vol. 14, Issue 05, 054004, (September 2009) https://doi.org/10.1117/1.3213601
Open Access
TOPICS: Mirrors, Luminescence, Double sideband modulation, Confocal microscopy, Infrared telescopes, Objectives, Microscopes, Optical tweezers, Ultraviolet radiation, Optical filters
Isabelle Texier Nogues, Mathieu Goutayer, Anabela da Silva, Laurent Guyon, Nadia Djaker, Véronique Josserand, Emmanuelle Neumann, Jerome Bibette, Françoise Vinet
Journal of Biomedical Optics, Vol. 14, Issue 05, 054005, (September 2009) https://doi.org/10.1117/1.3213606
Open Access
TOPICS: Luminescence, In vivo imaging, Nanoparticles, Quantum efficiency, Particles, Tumors, Optical properties, Magnesium, Absorption, Absorbance
Jean-Michel Maarek, Daniel Holschneider M.D.
Journal of Biomedical Optics, Vol. 14, Issue 05, 054006, (September 2009) https://doi.org/10.1117/1.3233652
Open Access
TOPICS: Blood, Luminescence, Photons, Absorption, Optical testing, Monte Carlo methods, Calibration, Indocyanine green, Scattering, Biological research
Journal of Biomedical Optics, Vol. 14, Issue 05, 054007, (September 2009) https://doi.org/10.1117/1.3227035
Open Access
TOPICS: Brain, Neuroimaging, Transducers, Imaging systems, Acquisition tracking and pointing, Photoacoustic tomography, In vivo imaging, Photoacoustic spectroscopy, 3D image processing, Brain imaging
Cheng-Kuang Lee, Meng-Tsan Tsai, Hsiang-Chieh Lee, Hsin-Ming Chen, Chun-Ping Chiang, Yih-Ming Wang, Chih-Chung Yang
Journal of Biomedical Optics, Vol. 14, Issue 05, 054008, (September 2009) https://doi.org/10.1117/1.3233653
Open Access
TOPICS: Optical coherence tomography, Collagen, Mouth, Tissues, Statistical analysis, Photomicroscopy, Photonics, Optoelectronics, Roads, Biopsy
Yuansheng Sun, Cynthia Booker, Sangeeta Kumari, Richard Day, Michael Davidson, Ammasi Periasamy
Journal of Biomedical Optics, Vol. 14, Issue 05, 054009, (September 2009) https://doi.org/10.1117/1.3227036
Open Access
TOPICS: Fluorescence resonance energy transfer, Microscopy, Fluorescent proteins, Luminescence, Imaging systems, Fluorescence lifetime imaging, Proteins, Argon ion lasers, Sun, Quantum efficiency
Kyle Quinn, Beth Winkelstein
Journal of Biomedical Optics, Vol. 14, Issue 05, 054010, (September 2009) https://doi.org/10.1117/1.3227037
Open Access
TOPICS: Tissues, Collagen, Tissue optics, Injuries, Signal to noise ratio, Tolerancing, Failure analysis, Kinematics, Data acquisition, Optical alignment
Michael Jaeger, Lea Siegenthaler, Michael Kitz, Martin Frenz
Journal of Biomedical Optics, Vol. 14, Issue 05, 054011, (September 2009) https://doi.org/10.1117/1.3227038
Open Access
TOPICS: Tissues, Transducers, Tissue optics, Natural surfaces, Acoustics, Speckle, Signal attenuation, Ultrasonography, Reconstruction algorithms, Absorption
John McMurdy III, Jonathan Reichner, Zara Mathews, Mary Markey, Sunny Intwala, Gregory Crawford
Journal of Biomedical Optics, Vol. 14, Issue 05, 054012, (September 2009) https://doi.org/10.1117/1.3233654
Open Access
TOPICS: Absorption, Skin, Diffuse reflectance spectroscopy, Tissues, Reflectivity, Ear, In vivo imaging, Proteins, Digital imaging, Ocean optics
Journal of Biomedical Optics, Vol. 14, Issue 05, 054013, (September 2009) https://doi.org/10.1117/1.3233655
Open Access
TOPICS: Diffusion, X-rays, Scattering, Tissues, Absorption, 3D modeling, Bone, Optical properties, Optical tomography, X-ray imaging
Journal of Biomedical Optics, Vol. 14, Issue 05, 054014, (September 2009) https://doi.org/10.1117/1.3233916
Open Access
TOPICS: Ultrasonography, Photoacoustic spectroscopy, Ovary, Imaging systems, Photoacoustic imaging, Transducers, Tissue optics, Ovarian cancer, 3D image processing, Cancer
Journal of Biomedical Optics, Vol. 14, Issue 05, 054015, (September 2009) https://doi.org/10.1117/1.3233946
Open Access
TOPICS: Gold, Tumors, Optical coherence tomography, Tissues, Tissue optics, In vivo imaging, Natural surfaces, Scattering, Biomedical optics, Signal attenuation
Fenghua Tian, Britton Chance, Hanli Liu
Journal of Biomedical Optics, Vol. 14, Issue 05, 054016, (September 2009) https://doi.org/10.1117/1.3241984
Open Access
TOPICS: Hemodynamics, Functional magnetic resonance imaging, Brain, Prefrontal cortex, Superposition, Near infrared spectroscopy, Nonlinear optics, Data analysis, Wavelets, Continuous wavelet transforms
Tatsuo Kawarasaki D.V.M., Kazuhiko Uchiyama, Atsushi Hirao, Sadahiro Azuma, Masayoshi Otake, Masatoshi Shibata, Seiko Tsuchiya, Shin Enosawa, Koichi Takeuchi, Kenjiro Konno, Yoji Hakamata, Hiroyuki Yoshino, Takuya Wakai, Shigeo Ookawara, Hozumi Tanaka, Eiji Kobayashi M.D., Takashi Murakami
Journal of Biomedical Optics, Vol. 14, Issue 05, 054017, (September 2009) https://doi.org/10.1117/1.3241985
Open Access
TOPICS: Green fluorescent protein, Pancreas, Tissues, Brain, Medical research, Transplantation, Liver, Medicine, Skin, Kidney
Mark van Turnhout, Sander Kranenbarg, Johan van Leeuwen
Journal of Biomedical Optics, Vol. 14, Issue 05, 054018, (September 2009) https://doi.org/10.1117/1.3241986
Open Access
TOPICS: Collagen, Tissues, Anisotropy, Tissue optics, Birefringence, Biomedical optics, Cartilage, Wave plates, Microscopy, Polarizers
Galit Levin, Anat Shirvan, Hagit Grimberg, Ayelet Reshef, Merav Yogev-Falach, Avi Cohen, Ilan Ziv
Journal of Biomedical Optics, Vol. 14, Issue 05, 054019, (September 2009) https://doi.org/10.1117/1.3253303
Open Access
TOPICS: Cell death, Luminescence, Tissues, Tumors, Molecular imaging, In vivo imaging, Microscopy, Endoscopy, Intestine, Visualization
Sven Meissner, Lilla Knels, Alexander Krueger, Thea Koch, Edmund Koch
Journal of Biomedical Optics, Vol. 14, Issue 05, 054020, (September 2009) https://doi.org/10.1117/1.3247149
Open Access
TOPICS: Optical coherence tomography, Lung, 3D image processing, Mechanics, Microscopy, Image segmentation, Tissues, In vivo imaging, 3D modeling, Imaging systems
Murat Canpolat, Mahmut Akyüz, Güzide Gökhan, Inanc Gürer, Recai Tuncer
Journal of Biomedical Optics, Vol. 14, Issue 05, 054021, (September 2009) https://doi.org/10.1117/1.3247151
Open Access
TOPICS: Tumors, Tissue optics, Brain, Tissues, Spectroscopy, Light scattering, Singular optics, Photons, Scattering, Refraction
Jiahuan Zhai, Ting Li, Zhongxing Zhang, Hui Gong
Journal of Biomedical Optics, Vol. 14, Issue 05, 054022, (September 2009) https://doi.org/10.1117/1.3247152
Open Access
TOPICS: Near infrared spectroscopy, Hemodynamics, Signal processing, Electrodes, Performance modeling, Prefrontal cortex, Brain, Signal detection, Cognition, Biomedical optics
Abigail Haka, Zoya Volynskaya, Joseph Gardecki, Jonathan Nazemi, Robert Shenk, Nancy Wang, Ramachandra Dasari, Maryann Fitzmaurice, Michael Feld
Journal of Biomedical Optics, Vol. 14, Issue 05, 054023, (September 2009) https://doi.org/10.1117/1.3247154
Open Access
TOPICS: Raman spectroscopy, Tissues, Diagnostics, Calibration, Breast, Breast cancer, Algorithm development, Surface plasmons, Cancer, Spectroscopy
Journal of Biomedical Optics, Vol. 14, Issue 05, 054024, (September 2009) https://doi.org/10.1117/1.3247155
Open Access
Jürgen Lademann, Heike Richter, Alena Alborova, D. Humme, Alexa Patzelt M.D., Axel Kramer, K. D. Weltmann, B. Hartmann, C. Ottomann, J. W. Fluhr, P. Hinz, G. Hübner, O. Lademann
Journal of Biomedical Optics, Vol. 14, Issue 05, 054025, (September 2009) https://doi.org/10.1117/1.3247156
Open Access
TOPICS: Plasma, Skin, Tissues, Dermatology, Ultraviolet radiation, Natural surfaces, In vivo imaging, Quartz, Temperature metrology, Ear
Journal of Biomedical Optics, Vol. 14, Issue 05, 054026, (September 2009) https://doi.org/10.1117/1.3247157
Open Access
TOPICS: Skin, Second-harmonic generation, Cornea, Signal detection, Confocal microscopy, Multiphoton microscopy, Tissues, Tissue optics, Refractive index, Roads
Bertan Hallacoglu, Richard Matulewicz, Harriet Paltiel, Horacio Padua, Patricio Gargollo, Glenn Cannon, Ahmad Alomari, Angelo Sassaroli, Sergio Fantini
Journal of Biomedical Optics, Vol. 14, Issue 05, 054027, (September 2009) https://doi.org/10.1117/1.3253318
Open Access
TOPICS: Surgery, Testis, Tissues, Near infrared spectroscopy, Tissue optics, Absorption, Optical fibers, Scattering, Oxygen, Diagnostics
Dong Li, Mildred Yang, Tao Lin, Wei Zheng, Jianan Qu
Journal of Biomedical Optics, Vol. 14, Issue 05, 054028, (September 2009) https://doi.org/10.1117/1.3250293
Open Access
TOPICS: Cadmium, Luminescence, Microscopy, Proteins, Toxicity, Lithium, Metals, Electron transport, Cell death, Electronics engineering
Moritz Friebel, Kirsten Povel, Hans-Joachim Cappius, Jürgen Helfmann, Martina Meinke
Journal of Biomedical Optics, Vol. 14, Issue 05, 054029, (September 2009) https://doi.org/10.1117/1.3250292
Open Access
TOPICS: Monte Carlo methods, Composites, Scattering, Optical properties, Reflectivity, Color vision, Absorption, Teeth, Light scattering, Particles
Journal of Biomedical Optics, Vol. 14, Issue 05, 054030, (September 2009) https://doi.org/10.1117/1.3251051
Open Access
TOPICS: Breast, Absorption, Collagen, Tissue optics, Tissues, Scattering, In vivo imaging, Diffuse optical spectroscopy, Diagnostics, Spectroscopy
Marta Larraona-Puy, Adrian Ghita, Alina Zoladek, William Perkins, Sandeep Varma, Iain Leach, Alexey Koloydenko, Hywel Williams, Ioan Notingher
Journal of Biomedical Optics, Vol. 14, Issue 05, 054031, (September 2009) https://doi.org/10.1117/1.3251053
Open Access
TOPICS: Raman spectroscopy, Tissues, Skin, Tumors, Imaging spectroscopy, Tissue optics, Data modeling, Surgery, Skin cancer, Tumor growth modeling
Jaakko Virtanen, Tommi Noponen, Pekka Meriläinen
Journal of Biomedical Optics, Vol. 14, Issue 05, 054032, (September 2009) https://doi.org/10.1117/1.3253323
Open Access
TOPICS: Independent component analysis, Principal component analysis, Near infrared spectroscopy, Hemodynamics, Natural surfaces, Sensors, Electronic filtering, Tissue optics, Signal detection, Tissues
Marie-Laure Anne, Caroline Le Lan, Valerie Monbet, Catherine Boussard-Plédel, Martine Ropert, Olivier Sire, Michel Pouchard, Christine Jard, Jacques Lucas, Jean-Luc Adam, Pierre Brissot M.D., Bruno Bureau, Olivier Loréal
Journal of Biomedical Optics, Vol. 14, Issue 05, 054033, (September 2009) https://doi.org/10.1117/1.3253319
Open Access
TOPICS: Iron, Spectroscopy, Mid-IR, Statistical analysis, Proteins, Profiling, Liver, Infrared spectroscopy, Mode conditioning cables, Genetics
Journal of Biomedical Optics, Vol. 14, Issue 05, 054034, (September 2009) https://doi.org/10.1117/1.3253320
Open Access
TOPICS: Particles, Gold, Pulsed laser operation, Picosecond phenomena, Nanoparticles, Luminescence, Biomedical optics, Laser irradiation, Cell death, Proteins
Patrick Johnson, Ad Lagendijk
Journal of Biomedical Optics, Vol. 14, Issue 05, 054036, (September 2009) https://doi.org/10.1117/1.3253332
Open Access
TOPICS: Systems modeling, Optical fibers, Diffusion, Foam, Statistical modeling, Anisotropic diffusion, Scattering, Anisotropy, Biomedical optics, Data modeling
Journal of Biomedical Optics, Vol. 14, Issue 05, 054037, (September 2009) https://doi.org/10.1117/1.3251059
Open Access
TOPICS: Optical coherence tomography, Image classification, Skin, Sun, Image analysis, Tissues, Principal component analysis, Image retrieval, Image resolution, Computer science
Shinji Umeyama, Toru Yamada
Journal of Biomedical Optics, Vol. 14, Issue 05, 054038, (September 2009) https://doi.org/10.1117/1.3253350
Open Access
TOPICS: Near infrared spectroscopy, Signal to noise ratio, Optical testing, Sensors, Biological research, Biomedical optics, Signal attenuation, Solids, Human subjects, Absorption
Trent Ridder, Ben Ver Steeg, Bentley Laaksonen
Journal of Biomedical Optics, Vol. 14, Issue 05, 054039, (September 2009) https://doi.org/10.1117/1.3253353
Open Access
TOPICS: Blood, Tissues, Tissue optics, Calibration, Capillaries, Spectroscopy, Near infrared spectroscopy, Bioalcohols, Spectroscopes, Absorption
Journal of Biomedical Optics, Vol. 14, Issue 05, 054040, (September 2009) https://doi.org/10.1117/1.3253382
Open Access
TOPICS: Luminescence, Molecules, Oxygen, Surgery, Femtosecond phenomena, Laser therapeutics, Laser irradiation, Pulsed laser operation, Laser vision correction, Multiphoton microscopy
Journal of Biomedical Optics, Vol. 14, Issue 05, 054041, (September 2009) https://doi.org/10.1117/1.3253388
Open Access
TOPICS: Second-harmonic generation, Luminescence, Signal generators, Ultrafast phenomena, Solids, Absorption, Gaussian pulse, Pulsed laser operation, Microscopy, Tissues
Valerie Duplan, Yannick Miron, Eric Frost, Michel Grandbois, Jan Dubowski
Journal of Biomedical Optics, Vol. 14, Issue 05, 054042, (September 2009) https://doi.org/10.1117/1.3251057
Open Access
TOPICS: Gallium arsenide, Luminescence, Particles, Biosensors, Atomic force microscopy, Microscopy, Semiconductors, FT-IR spectroscopy, Molecules, Nanoparticles
Sheng-Hao Tseng, Carole Hayakawa, Jerome Spanier, Anthony Durkin
Journal of Biomedical Optics, Vol. 14, Issue 05, 054043, (September 2009) https://doi.org/10.1117/1.3253386
Open Access
TOPICS: Monte Carlo methods, Skin, Optical properties, Diffusion, Scattering, Photon transport, Absorption, Performance modeling, Tissue optics, Sensors
Oguz Baskurt, Mehmet Uyuklu, Max Hardeman, Herbert Meiselman
Journal of Biomedical Optics, Vol. 14, Issue 05, 054044, (September 2009) https://doi.org/10.1117/1.3251050
Open Access
TOPICS: Lawrencium, Blood, Plasma, Amplifiers, Reflectivity, Artificial intelligence, Physiology, Medicine, Signal detection, Macromolecules
You-Chen Tao, Daniel Fried
Journal of Biomedical Optics, Vol. 14, Issue 05, 054045, (September 2009) https://doi.org/10.1117/1.3253390
Open Access
TOPICS: Near infrared, Laser ablation, Imaging systems, Teeth, Dental caries, Gas lasers, Optical coherence tomography, Laser systems engineering, Carbon monoxide, Reflectivity
Hsiao-Chuan Wang, Simon Fleming, Yung-Chun Lee, Susan Law, Michael Swain, Jing Xue
Journal of Biomedical Optics, Vol. 14, Issue 05, 054046, (September 2009) https://doi.org/10.1117/1.3253396
Open Access
TOPICS: Nondestructive evaluation, Wave propagation, Teeth, Dispersion, Ultrasonics, Optical fibers, Interferometers, Fiber lasers, Acoustics, In vivo imaging
Nikolaus Dragostinoff, René Werkmeister, Martin Gröschl, Leopold Schmetterer
Journal of Biomedical Optics, Vol. 14, Issue 05, 054047, (September 2009) https://doi.org/10.1117/1.3251049
Open Access
TOPICS: Eye, Cornea, Interferometry, Tissue optics, Mirrors, Charge-coupled devices, Retina, Reflection, In vivo imaging, Distance measurement
Michal Tepper, Rotem Neeman, Yonat Milstein, Moshe Ben-David, Israel Gannot
Journal of Biomedical Optics, Vol. 14, Issue 05, 054048, (September 2009) https://doi.org/10.1117/1.3251036
Open Access
TOPICS: Absorption, Tissues, Skin, Oxygen, Thermography, Temperature metrology, Tissue optics, Thermal modeling, Algorithm development, Biological research
Journal of Biomedical Optics, Vol. 14, Issue 05, 054049, (September 2009) https://doi.org/10.1117/1.3251044
Open Access
TOPICS: Capillaries, Tissues, Blood, Diffusion, In vivo imaging, Blood vessels, Biomedical optics, Absorption, Tissue optics, Photoacoustic microscopy
Arvind Chandrasekaran, Muthukumaran Packirisamy
Journal of Biomedical Optics, Vol. 14, Issue 05, 054050, (September 2009) https://doi.org/10.1117/1.3210766
Open Access
TOPICS: Waveguides, Absorption, Absorbance, Glasses, Silicon, Infrared radiation, Biomedical optics, Hydrogen, Photodetectors, Optical activity
Karthik Vishwanath, Daniel Klein, Kevin Chang, Thies Schroeder, Mark Dewhirst D.V.M., Nirmala Ramanujam
Journal of Biomedical Optics, Vol. 14, Issue 05, 054051, (September 2009) https://doi.org/10.1117/1.3251013
Open Access
TOPICS: Tumors, Diffuse reflectance spectroscopy, Cancer, Chromium, Head, Neck, Optical spectroscopy, Oncology, Animal model studies, Tumor growth modeling
Errata
Xian Chen, Zhilie Tang, Yongheng He, Haifeng Liu, Yadong Wei, Yongbo Wu
Journal of Biomedical Optics, Vol. 14, Issue 05, 059801, (September 2009) https://doi.org/10.1117/1.3223339
Open Access
TOPICS: Photoacoustic imaging, Acoustics, Adhesives, Information technology, Physics, Quantum information, Polymethylmethacrylate
Darine Abi-Haidar, Thomas Olivier
Journal of Biomedical Optics, Vol. 14, Issue 05, 059802, (September 2009) https://doi.org/10.1117/1.3223351
Open Access
TOPICS: Confocal microscopy, Reflectivity, Two photon excitation microscopy, Skull
Yuan Liu, Tzu-Lin Sun, Wen Lo, Chen-Yuan Dong, Hsiao-Ching Chen, Shu-Mei Yang, Ling-Ling Chiou, Guan-Tarn Huang, Hsuan-Shu Lee
Journal of Biomedical Optics, Vol. 14, Issue 05, 059803, (September 2009) https://doi.org/10.1117/1.3249658
Open Access
TOPICS: Visualization, Multiphoton microscopy, Physics, Medicine, Internal medicine, Sun, Agriculture, Biotechnology
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