Prof. Tong Ye Profile

Prof. Tong Ye

Associate Professor

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Publications (30)

Proceedings Article | 13 March 2024 Presentation + Paper

Enhancing digital hologram reconstruction using reverse-attention loss for untrained physics-driven deep learning models with uncertain distance

Xiwen Chen, Hao Wang, Zhao Zhang, Zhenmin Li, Huayu Li, Tong Ye, Abolfazl Razi

Proceedings Volume 12903, 129030L (2024) https://doi.org/10.1117/12.3005570

KEYWORDS: Digital holography, 3D image reconstruction, Reverse modeling, Holograms, Deep learning, Mathematical optimization, Image restoration, Education and training

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Proceedings Article | 13 March 2024 Poster

Modeling the mechanical focal plane of atomic force microscopy

Adam Baker, Bruce Gao, Reece Fratus, Delphine Dean, Tong Ye, Farhad Shokati

Proceedings Volume PC12844, PC128440X (2024) https://doi.org/10.1117/12.3003157

KEYWORDS: Atomic force microscopy, Modeling, Polystyrene, Mechanics, Equipment, Composites, Beam analyzers, Analog electronics, 3D modeling, 3D metrology

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Proceedings Article | 13 March 2024 Poster + Paper

Noninvasive imaging of blood flow in neoplastic skin lesions using laser speckle contrast

Sophia Daniel, Zhao Zhang, Meenakshi Mukherji, Stephanie Waggett, Elliott Lyles, Pelin Sagut, Nicholas Strat, Nicholas Stiebler, Manuel Valdebran, Tong Ye

Proceedings Volume 12816, 128160F (2024) https://doi.org/10.1117/12.3001816

KEYWORDS: Skin, Laser speckle contrast imaging, Speckle, Blood circulation, Dermatology, Biopsy, Biological imaging, Windows, Cameras, Reflection

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Proceedings Article | 25 April 2023 Presentation + Paper

Assessment of the microstructural differences of the articular cartilage surface in a porcine tibiofemoral joint using nonlinear optical microscopy

Calvin Chernyatinskiy, Hongming Fan, Michael Le, Zhao Zhang, Emily Ye, Jennifer Hsu, Maria Lutas, Bruce Gao, Tong Ye

Proceedings Volume 12384, 123840I (2023) https://doi.org/10.1117/12.2650102

KEYWORDS: Cartilage, Collagen, Second harmonic generation, Optical microscopy, Biological samples, Biomechanics, Bone, Bandpass filters, Tunable filters, Tissues

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Proceedings Article | 15 March 2023 Paper

Coregistration of multiphoton fluorescence with nanoscopic resolution atomic force microscopy

Adam Baker, Zhi Gao, Thomas Borg, Qi Wang, Tong Ye, Arman Kilic, Reece Fratus, Lucas Schmidt

Proceedings Volume 12430, 1243011 (2023) https://doi.org/10.1117/12.2650709

KEYWORDS: Atomic force microscopy, Tissues, Polydimethylsiloxane, Natural surfaces, Myocardium, Biological samples, Image registration, Second harmonic generation, Heart, Multiphoton fluorescence microscopy

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Proceedings Article | 14 March 2023 Presentation + Paper

Multimodal microscopy imaging of cardiac collagen network: Are we looking at the same structures?

Zhao Zhang, Lily Neff, Amy Bradshaw, Hongming Fan, Emily Ye, William Richardson, Bruce Gao, Tong Ye

Proceedings Volume 12355, 1235508 (2023) https://doi.org/10.1117/12.2650223

KEYWORDS: Collagen, Confocal microscopy, Myocardium, Stimulated emission depletion microscopy, Second harmonic generation, Microscopy, Fluorescence, Tissues, Polarized light, Optical microscopy

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Proceedings Article | 8 March 2023 Poster + Paper

Evaluating vessel mechanics with optical coherence tomography based digital image correlation

Reece Fratus, Thomas Fair, Adam Baker, Lucas Schmidt, Tong Ye, Qi Wang, Taixing Cui, Thomas Borg, Arman Kilic, Bruce Gao

Proceedings Volume 12367, 1236712 (2023) https://doi.org/10.1117/12.2650491

KEYWORDS: Optical coherence tomography, Digital image correlation, Tissues, Arteries, Veins, Mechanics, Imaging systems, Image resolution, Speckle pattern

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Proceedings Article | 2 March 2022 Presentation + Paper

Integrating SHG and two-color STED microscopy for super-resolved imaging of cell-matrix interactions in myocardium

Zhao Zhang, Adam Baker, Hongming Fan, William Richardson, Thomas Borg, Bruce Gao, Tong Ye

Proceedings Volume 11967, 1196708 (2022) https://doi.org/10.1117/12.2610374

KEYWORDS: Stimulated emission depletion microscopy, Second-harmonic generation, Microscopy, Confocal microscopy, Collagen, Microscopes, Nanoparticles, Visualization, Proteins

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Proceedings Article | 2 March 2022 Presentation + Paper

Automated chondrocyte viability analysis of articular cartilage based on deep learning segmentation and classification of two-photon microscopic images

Hongming Fan, Pei Xu, Michael Le, Jennifer Hsu, Xun Chen, Yang Li, Zhao Zhang, Bruce Gao, Shane Woolf, Tong Ye

Proceedings Volume 11966, 119660C (2022) https://doi.org/10.1117/12.2609880

KEYWORDS: Image segmentation, Image processing, Cartilage, Second-harmonic generation, Microscopes, Image classification, Dispersion, Signal detection

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Proceedings Article | 5 March 2021 Presentation + Paper

Effects of timolol in skin tissue repair: a longitudinal and multimodal in vivo imaging study with two-photon excitation fluorescence and second harmonic generation microscopy

Hongming Fan, Gabriella Santa Lucia, Alexandra Ritter, Alan Snyder, John Plante, Adam Sloger, Chelsea Rose, Steven Gannon, Yang Li, Heidy Revelo, Nicholas Strat, Carter Colwell, Amber Roberts, Manuel Valdebran, Tong Ye

Proceedings Volume 11618, 116180I (2021) https://doi.org/10.1117/12.2578544

KEYWORDS: Tissues, Skin, Microscopy, Luminescence, Harmonic generation, In vivo imaging, Wound healing, Two photon imaging, Second-harmonic generation, Collagen

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Proceedings Article | 20 February 2020 Paper

Deep learning cell segmentation in chondrocyte viability assessment using nonlinear optical microscopy

Xun Chen, Nicole Wyman, Yang Li, Zheng Zhang, Steven Gannon, Chelsea Rose, Maria Lutas, Bruce Gao, Tong Ye

Proceedings Volume 11251, 112512K (2020) https://doi.org/10.1117/12.2547088

KEYWORDS: Image segmentation, Cartilage, Luminescence, Second-harmonic generation, Image processing algorithms and systems, Harmonic generation, Visualization, Tissues, Medical research, Microscopy

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Proceedings Article | 14 February 2020 Paper

Study of the sarcomeric addition process in a tissue-like cell construct under mechanical overload via TPEF-SHG imaging system

Ailin Wei, Zhonghai Wang, Zongming Yang, Shenghao Tan, Tong Ye, Yonghong Shao, Thomas Borg, Bruce Gao

Proceedings Volume 11244, 112442E (2020) https://doi.org/10.1117/12.2546280

KEYWORDS: Two photon excitation microscopy, Imaging systems, Heart, Beam splitters, Second-harmonic generation, Tissues, Microscopes

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Proceedings Article | 22 February 2019 Paper

Nondestructive method for chondrocyte viability assessment in articular cartilage tissues with nonlinear optical microscopy

Yang Li, Beckham Watkins, Elizabeth Nadeau, Russell Reeves, Razeen Basunia, Neal Saini, Xun Chen, Steven Gannon, Vincent Pellegrini, Hai Yao, Tong Ye

Proceedings Volume 10882, 108822L (2019) https://doi.org/10.1117/12.2510746

KEYWORDS: Auto-fluorescence imaging, Cartilage, Tissues, Microscopy, Optical microscopy, Second-harmonic generation, Nondestructive evaluation, Collagen

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Proceedings Article | 23 February 2018 Paper

Engineering the on-axis intensity of Bessel beam by a feedback tuning loop

Runze Li, Xianghua Yu, Yanlong Yang, Tong Peng, Baoli Yao, Chunmin Zhang, Tong Ye

Proceedings Volume 10499, 1049921 (2018) https://doi.org/10.1117/12.2290358

KEYWORDS: Bessel beams, Axicons, Spatial light modulators, Optimization (mathematics), Modulation, Beam propagation method, Genetic algorithms, Feedback loops, Apodization, Optical beam profilers

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Proceedings Article | 15 March 2016 Presentation + Paper

Aberration correction for stimulated emission depletion microscopy with coherent optical adaptive technique

Wei Yan, Yanlong Yang, Yang Li, Xiao Peng, Danying Lin, Junle Qu, Tong Ye

Proceedings Volume 9717, 97170K (2016) https://doi.org/10.1117/12.2211907

KEYWORDS: Tissue optics, Aberration correction, Adaptive optics, Stimulated emission depletion microscopy, Microscopy, Spatial resolution, Spatial light modulators, Microscopes, Image resolution, Point spread functions, Image segmentation, Super resolution

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Proceedings Article | 5 March 2015 Paper

Two-photon excited fluorescence microendoscopic imaging using a GRIN lens

Wei Yan, Xiao Peng, Danying Lin, Qi Wang, Jian Gao, Jie Zhou, Tong Ye, Junle Qu, Hanben Niu

Proceedings Volume 9329, 93290N (2015) https://doi.org/10.1117/12.2079183

KEYWORDS: Luminescence, Imaging systems, GRIN lenses, Blood circulation, Tissues, In vivo imaging, Objectives, Microscopy, Microscopes, Endoscopy

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Proceedings Article | 5 March 2015 Paper

Laser scanning stereomicroscopy for fast volumetric imaging with two-photon excitation and scanned Bessel beams

Yanlong Yang, Xing Zhou, Runze Li, Mark Van Horn, Tong Peng, Ming Lei, Di Wu, Xun Chen, Baoli Yao, Tong Ye

Proceedings Volume 9329, 93292W (2015) https://doi.org/10.1117/12.2079646

KEYWORDS: Bessel beams, 3D image processing, Luminescence, Laser scanners, Objectives, Axicons, Microscopy, Glasses, Mirrors, Stereoscopy

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Proceedings Article | 12 March 2014 Paper

Experimental analysis of focal fields in laser scanning fluorescence stereomicroscopy

Yanlong Yang, Tong Peng, Ming Lei, Runze Li, Xing Zhou, Di Wu, Baoli Yao, Tong Ye

Proceedings Volume 8949, 89491R (2014) https://doi.org/10.1117/12.2040248

KEYWORDS: Luminescence, Laser scanners, Mirrors, Microscopy, Confocal microscopy, Objectives, Bessel beams, 3D image processing, Image processing, Image acquisition

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Proceedings Article | 12 March 2014 Paper

Selective plane illumination microscopy with structured illumination based on spatial light modulators

Runze Li, Xing Zhou, Di Wu, Tong Peng, Yanlong Yang, Ming Lei, Xianhua Yu, Baoli Yao, Tong Ye

Proceedings Volume 8949, 89491S (2014) https://doi.org/10.1117/12.2040319

KEYWORDS: Spatial light modulators, Modulation, Microscopy, Objectives, Phase shift keying, 3D image processing, Stereolithography, Mirrors, Image acquisition, Prisms

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Proceedings Article | 22 February 2013 Paper

Two-Photon Fluorescence Stereomicroscopy with Bessel Beams

Yanlong Yang, Ming Lei, Juanjuan Zheng, Runze Li, Shaohui Yan, Baoli Yao, Tong Ye

Proceedings Volume 8588, 85882K (2013) https://doi.org/10.1117/12.2002850

KEYWORDS: Bessel beams, Luminescence, Axicons, 3D image processing, Objectives, Microscopy, Mirrors, Confocal microscopy, Laser scanners, Multiphoton fluorescence microscopy

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SPIE Journal Paper | 1 December 2011 Open Access

Myofibrillogenesis in live neonatal cardiomyocytes observed with hybrid two-photon excitation fluorescence-second harmonic generation microscopy

Honghai Liu, Wan Qin, Zhen Ma, Bruce Gao, Yonghong Shao, Tong Ye, Thomas Borg

JBO, Vol. 16, Issue 12, 126012, (December 2011) https://doi.org/10.1117/12.10.1117/1.3662457

KEYWORDS: Imaging systems, Second-harmonic generation, Harmonic generation, Microscopes, Microscopy, Luminescence, Green fluorescent protein, Beam splitters, Objectives, Signal detection

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Proceedings Article | 3 March 2011 Paper

3D myofibril imaging in live cardiomyocytes via hybrid SHG-TPEF microscopy

Yonghong Shao, Honghai Liu, Tong Ye, Tom Borg, Junle Qu, Xiang Peng, Hanben Niu, Bruce Gao

Proceedings Volume 7903, 79030F (2011) https://doi.org/10.1117/12.875607

KEYWORDS: Second-harmonic generation, Heart, 3D image processing, Imaging systems, Microscopes, Polarization, Scanners, Stereoscopy, Microscopy, Luminescence

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SPIE Journal Paper | 1 September 2008 Open Access

Probing skin pigmentation changes with transient absorption imaging of eumelanin and pheomelanin

Dan Fu, Tong Ye, Thomas Matthews, James Grichnik, Lian Hong, John Simon, Warren Warren

JBO, Vol. 13, Issue 05, 054036, (September 2008) https://doi.org/10.1117/12.10.1117/1.2976424

KEYWORDS: Skin, Absorption, Melanoma, Tissues, Signal to noise ratio, Phase shift keying, Thermal effects, Modulation, Laser beam diagnostics, Photothermal effect

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SPIE Journal Paper | 1 July 2008 Open Access

Label-free in vivo optical imaging of microvasculature and oxygenation level

Dan Fu, Thomas Matthews, Tong Ye, Ivan Piletic, Warren Warren

JBO, Vol. 13, Issue 04, 040503, (July 2008) https://doi.org/10.1117/12.10.1117/1.2968260

KEYWORDS: Blood vessels, Absorption, Tumors, Ear, In vivo imaging, Tissues, Laser scanners, Signal to noise ratio, Optical imaging, Hypoxia

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Proceedings Article | 15 February 2008 Paper

Label free high resolution in vivo optical imaging of microvessels

Dan Fu, Thomas Matthews, Tong Ye, Warren Warren

Proceedings Volume 6860, 68601Q (2008) https://doi.org/10.1117/12.763969

KEYWORDS: Absorption, Blood vessels, Ear, In vivo imaging, Tissues, Blood, Image resolution, Tumors, Signal to noise ratio, Laser scanners

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Proceedings Article | 8 February 2008 Paper

Two-photon absorption and transient photothermal imaging of pigments in tissues

Tong Ye, Dan Fu, Thomas Matthews, Lian Hong, John Simon, Warren Warren

Proceedings Volume 6842, 684206 (2008) https://doi.org/10.1117/12.764248

KEYWORDS: Absorption, Skin, Tissues, Picosecond phenomena, Phase shift keying, Modulation, Melanoma, Beam splitters, Microscopes, In vivo imaging

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SPIE Journal Paper | 1 September 2007 Open Access

Two-color, two-photon, and excited-state absorption microscopy

Dan Fu, Tong Ye, Thomas Matthews, Gunay Yurtsever, Warren Warren

JBO, Vol. 12, Issue 05, 054004, (September 2007) https://doi.org/10.1117/12.10.1117/1.2780173

KEYWORDS: Absorption, Modulation, Microscopy, Melanoma, Nonlinear optics, Luminescence, Laser beam diagnostics, Spectroscopy, Pulsed laser operation, Signal processing

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Proceedings Article | 23 March 2007 Paper

Two-color excited-state absorption imaging of melanins

Dan Fu, Tong Ye, Thomas Matthews, Gunay Yurtsever, Lian Hong, John Simon, Warren Warren

Proceedings Volume 6424, 642402 (2007) https://doi.org/10.1117/12.698756

KEYWORDS: Absorption, Tissues, Melanoma, Modulation, Skin, 3D image processing, Microscopes, Laser beam diagnostics, Microscopy, Mode locking

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Proceedings Article | 12 February 2007 Paper

Self-phase modulation and two-photon absorption imaging of cells and active neurons

Martin Fischer, Henry Liu, Ivan Piletic, Tong Ye, Ryohei Yasuda, Warren Warren

Proceedings Volume 6442, 64421J (2007) https://doi.org/10.1117/12.698693

KEYWORDS: Scanning probe microscopy, Absorption, Tissues, Luminescence, Modulation, Neurons, Oscillators, Microscopy, Molecules, Melanoma

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Proceedings Article | 23 February 2006 Paper

Imaging melanin by two-photon absorption microscopy

Tong Ye, Gunay Yurtsever, Martin Fischer, John Simon, Warren Warren

Proceedings Volume 6089, 60891X (2006) https://doi.org/10.1117/12.646139

KEYWORDS: Absorption, Microscopes, Tissues, Luminescence, Melanoma, Microscopy, Skin, Multiphoton fluorescence microscopy, Modulation, Multiphoton microscopy

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Showing 5 of 30 publications

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