CuGene as a tool to view and explore genomic data

Michał Haponiuk; Magdalena Pawełkowicz; Zbigniew Przybecki; Robert M. Nowak

doi:10.1117/12.2280533

7 August 2017 CuGene as a tool to view and explore genomic data

Michał Haponiuk, Magdalena Pawełkowicz, Zbigniew Przybecki, Robert M. Nowak

Proceedings Volume 10445, Photonics Applications in Astronomy, Communications, Industry, and High Energy Physics Experiments 2017; 1044532 (2017) https://doi.org/10.1117/12.2280533
Event: Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2017, 2017, Wilga, Poland

Abstract

Integrated CuGene is an easy-to-use, open-source, on-line tool that can be used to browse, analyze, and query genomic data and annotations. It places annotation tracks beneath genome coordinate positions, allowing rapid visual correlation of different types of information. It also allows users to upload and display their own experimental results or annotation sets. An important functionality of the application is a possibility to find similarity between sequences by applying four different algorithms of different accuracy. The presented tool was tested on real genomic data and is extensively used by Polish Consortium of Cucumber Genome Sequencing.

Citation Download Citation

Michał Haponiuk, Magdalena Pawełkowicz, Zbigniew Przybecki, and Robert M. Nowak "CuGene as a tool to view and explore genomic data", Proc. SPIE 10445, Photonics Applications in Astronomy, Communications, Industry, and High Energy Physics Experiments 2017, 1044532 (7 August 2017); https://doi.org/10.1117/12.2280533

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