Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells

Debasis Mitra; Rostyslav Boutchko; Judhajeet Ray; Marit Nilsen-Hamilton

doi:10.1117/12.2081691

17 March 2015 Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells

Debasis Mitra, Rostyslav Boutchko, Judhajeet Ray, Marit Nilsen-Hamilton

Author Affiliations +

Proceedings Volume 9420, Medical Imaging 2015: Digital Pathology; 942011 (2015) https://doi.org/10.1117/12.2081691
Event: SPIE Medical Imaging, 2015, Orlando, Florida, United States

Abstract

In this work we present a time-lapsed confocal microscopy image analysis technique for an automated gene expression study of multiple single living cells. Fluorescence Resonance Energy Transfer (FRET) is a technology by which molecule-to-molecule interactions are visualized. We analyzed a dynamic series of ~10² images obtained using confocal microscopy of fluorescence in yeast cells containing RNA reporters that give a FRET signal when the gene promoter is activated. For each time frame, separate images are available for three spectral channels and the integrated intensity snapshot of the system. A large number of time-lapsed frames must be analyzed to identify each cell individually across time and space, as it is moving in and out of the focal plane of the microscope. This makes it a difficult image processing problem. We have proposed an algorithm here, based on scale-space technique, which solves the problem satisfactorily. The algorithm has multiple directions for even further improvement. The ability to rapidly measure changes in gene expression simultaneously in many cells in a population will open the opportunity for real-time studies of the heterogeneity of genetic response in a living cell population and the interactions between cells that occur in a mixed population, such as the ones found in the organs and tissues of multicellular organisms.

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Debasis Mitra, Rostyslav Boutchko, Judhajeet Ray, and Marit Nilsen-Hamilton "Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells", Proc. SPIE 9420, Medical Imaging 2015: Digital Pathology, 942011 (17 March 2015); https://doi.org/10.1117/12.2081691

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