Deep learning tissue segmentation of beating embryonic hearts from 4-D OCT images

Shan Ling; Jiawei Chen; Brecken Blackburn; Maryse Lapierre-Landry; Stephanie M. Ford; Michael W. Jenkins M.D.; Michiko Watanabe; Andrew M. Rollins

doi:10.1117/12.2615082

2 March 2022 Deep learning tissue segmentation of beating embryonic hearts from 4-D OCT images

Shan Ling, Jiawei Chen, Brecken Blackburn, Maryse Lapierre-Landry, Stephanie M. Ford, Michael W. Jenkins M.D., Michiko Watanabe, Andrew M. Rollins

Author Affiliations +

Proceedings Volume PC11959, Dynamics and Fluctuations in Biomedical Photonics XIX; PC1195901 (2022) https://doi.org/10.1117/12.2615082
Event: SPIE BiOS, 2022, San Francisco, California, United States

Abstract

Optical coherence tomography (OCT) has been applied to investigate heart development because of its capability to image both structure and function of tiny beating embryonic hearts. Labeling heart structures is necessary for quantifying mechanical functions such as cardiac motion, wall strain, blood flow and shear stress, of looping hearts. Since manual segmentation is time-consuming and labor- intensive, this study aimed to use deep learning to automatically extract dynamic shapes including the myocardium, the endocardial cushions, and the lumen of beating embryonic hearts from 4-D OCT images. This will benefit research on heart development, especially studies requiring large cohorts of embryos.

Conference Presentation

Citation Download Citation

Shan Ling, Jiawei Chen, Brecken Blackburn, Maryse Lapierre-Landry, Stephanie M. Ford, Michael W. Jenkins M.D., Michiko Watanabe, and Andrew M. Rollins "Deep learning tissue segmentation of beating embryonic hearts from 4-D OCT images", Proc. SPIE PC11959, Dynamics and Fluctuations in Biomedical Photonics XIX, PC1195901 (2 March 2022); https://doi.org/10.1117/12.2615082

ACCESS THE FULL ARTICLE

INSTITUTIONAL
Select your institution to access the SPIE Digital Library.

SELECT YOUR INSTITUTION

PERSONAL
Sign in with your SPIE account to access your personal subscriptions or to use specific features such as save to my library, sign up for alerts, save searches, etc.

PERSONAL SIGN IN

No SPIE Account? Create one

PURCHASE THIS CONTENT

SUBSCRIBE TO DIGITAL LIBRARY

50 downloads per 1-year subscription

Members: $195

Non-members: $335 ADD TO CART

25 downloads per 1 - year subscription

Members: $145

Non-members: $250 ADD TO CART

PURCHASE SINGLE ARTICLE

Includes PDF, HTML & Video, when available

Members: $17.00

Non-members: $21.00 ADD TO CART

PROCEEDINGS
PRESENTATION

WATCH
PRESENTATION SAVE TO MY LIBRARY

GET CITATION

KEYWORDS

Heart

Image segmentation

Optical coherence tomography

Tissues

Imaging systems

Bioalcohols

Blood circulation

Show All Keywords

Keywords/Phrases

Search In:

Publication Years