Open Access
23 April 2021 Deep feature loss to denoise OCT images using deep neural networks
Maryam Mehdizadeh, Cara MacNish, Di Xiao, David Alonso-Caneiro, Jason Kugelman, Mohammed Bennamoun
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Abstract

Significance: Speckle noise is an inherent limitation of optical coherence tomography (OCT) images that makes clinical interpretation challenging. The recent emergence of deep learning could offer a reliable method to reduce noise in OCT images.

Aim: We sought to investigate the use of deep features (VGG) to limit the effect of blurriness and increase perceptual sharpness and to evaluate its impact on the performance of OCT image denoising (DnCNN).

Approach: Fifty-one macula-centered OCT pairs were used in training of the network. Another set of 20 OCT pair was used for testing. The DnCNN model was cascaded with a VGG network that acted as a perceptual loss function instead of the traditional losses of L1 and L2. The VGG network remains fixed during the training process. We focused on the individual layers of the VGG-16 network to decipher the contribution of each distinctive layer as a loss function to produce denoised OCT images that were perceptually sharp and that preserved the faint features (retinal layer boundaries) essential for interpretation. The peak signal-to-noise ratio (PSNR), edge-preserving index, and no-reference image sharpness/blurriness [perceptual sharpness index (PSI), just noticeable blur (JNB), and spectral and spatial sharpness measure (S3)] metrics were used to compare deep feature losses with the traditional losses.

Results: The deep feature loss produced images with high perceptual sharpness measures at the cost of less smoothness (PSNR) in OCT images. The deep feature loss outperformed the traditional losses (L1 and L2) for all of the evaluation metrics except for PSNR. The PSI, S3, and JNB estimates of deep feature loss performance were 0.31, 0.30, and 16.53, respectively. For L1 and L2 losses performance, the PSI, S3, and JNB were 0.21 and 0.21, 0.17 and 0.16, and 14.46 and 14.34, respectively.

Conclusions: We demonstrate the potential of deep feature loss in denoising OCT images. Our preliminary findings suggest research directions for further investigation.

CC BY: © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
Maryam Mehdizadeh, Cara MacNish, Di Xiao, David Alonso-Caneiro, Jason Kugelman, and Mohammed Bennamoun "Deep feature loss to denoise OCT images using deep neural networks," Journal of Biomedical Optics 26(4), 046003 (23 April 2021). https://doi.org/10.1117/1.JBO.26.4.046003
Received: 16 November 2020; Accepted: 1 April 2021; Published: 23 April 2021
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CITATIONS
Cited by 18 scholarly publications.
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KEYWORDS
Optical coherence tomography

Denoising

Neural networks

Speckle

Image denoising

Feature extraction

Signal attenuation

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